Termites are unique among the social insects. Isoptera is the only Order wi
thin the Insecta comprised entirely of diploid animals whose polyethic, cas
te-filled societies contain both male and female workers. The cryptic lifes
tyle, complex caste system, dynamic developmental pathways, and social comp
osition present significant challenges to scientists attempting to delineat
e the development of and interactions within subterranean termite societies
. For example, it is assumed that subterranean termite populations from the
economically important genus Reticulitermes are closed and established by
a single queen and a single king. As the colony grows progeny of the royal
progenitors, secondary reproductives, develop that mate with their nest-mat
es to produce progeny (1, p. 138), This view of subterranean termite social
structure has been the foundation for discussion and research on topics as
diverse as eusocial evolution and control tactics based on population mana
gement. Although secondary reproductives may be numerous in Reticulitermes
populations, female secondary reproductives are direct descendants of the q
ueen and, as such, both inherit and pass on her mtDNA legacy. Thus each col
ony should present the mtDNA fingerprint of the founding queen. Here we pre
sent maternally inherited mitochondrial DNA (mtDNA) sequence from randomly
chosen individual termites collected over three years from a single inspect
ion port (feeding site). Phylogenetic analyses of cytochrome oxidase II (CO
II) sequence demonstrated unique mtDNA genotypes among dates and within a s
pecific date. These unexpected results are the first mtDNA data to challeng
e the accepted assumption of a closed Reticulitermes colony with a single m
atriarch.