A panel of 16S ribosomal RNA gene probes has been developed for the study o
f the epidemiology of heartwater; five of these detect different cowdria ge
notypes, one detects five distinct genotypes; one detects any Group III Ehr
lichia species other than Cowdria and one detects any Group II Ehrlichia sp
ecies. These probes have been used on PCR-amplified rickettsial 16S rRNA ge
nes from over 200 Amblyomma hebraeum ticks. Control ticks were laboratory-r
eared and either uninfected or fed on sheep experimentally infected with di
fferent cowdria isolates, field ticks were collected from animals in heartw
ater-endemic areas. All tick-derived DNA samples were also examined by PCR
amplification and probing for two other cowdria genes (map1 and pCS20) whic
h have previously been used for heartwater epidemiology. This paper describ
es the first direct comparison of all currently available DNA probes for he
artwater-associated organisms.