A frequent challenge to ecologists and evolutionary biologists is the need
to determine the genetic relationships among individuals, demes, and metapo
pulations. Genetic markers that provide sufficient resolution could be used
to elucidate mating systems, determine parentage, and assess gene flow amo
ng populations. I developed a set of (CT)(n), (GT)(n), and (GATA)(n) micros
atellite markers for the white-footed mouse, Peromyscus leucopus. Variation
at six microsatellite loci was assessed for populations ranging from Maine
to New Mexico (transect populations) and for a second set of populations i
n South Dakota. Alleles per locus ranged from 11 to 29. Alleles per locus p
er population ranged from 6.5 to 8.8, with an average of 7.3. Microsatellit
e data were congruent with allozymic, chromosomal, and other data in depict
ing asymmetrical gene flow between two chromosomal cytotypes. Discriminant
function analysis of microsatellite data provided greater than or equal to
92% con ect classification to cytotype, 63% correct classification to popul
ations within the transect from Maine to New Mexico, and 100% correct class
ification to populations in South Dakota. The ecological distribution of Pe
romyscus leucopus and the extensive ecological and genetic knowledge alread
y established for this species, combined with the highly polymorphic micros
atellite markers developed in this study, make this an excellent system for
addressing questions relevant to ecology, behavior, evolution, and conserv
ation biology.