An open question in meiosis is whether the Rad51 recombination protein func
tions solely in meiotic recombination or whether it is also involved in the
chromosome homology search. To address this question, we have performed th
ree-dimensional high-resolution immunofluorescence microscopy to visualize
native Rad51 structures in maize male meiocytes. Maize has two closely rela
ted RAD51 genes that are expressed at low levels in differentiated tissues
and at higher levels in mitotic and meiotic tissues. Cells and nuclei were
specially fixed and embedded in polyacrylamide to maintain both native chro
mosome structure and the three dimensionality of the specimens. Analysis of
Rad51 in maize meiocytes revealed that when chromosomes condense during le
ptotene, Rad51 is diffuse within the nucleus. Rad51 foci form on the chromo
somes at the beginning of zygotene and rise to similar to 500 per nucleus b
y mid-zygotene when chromosomes are pairing and synapsing. During chromosom
e pairing, we consistently found two contiguous Rad51 fool on paired chromo
somes. These paired foci may identify the sites where DNA sequence homology
is being compared. During pachytene, the number of Rad51 foci drops to sev
en to 22 per nucleus. This higher number corresponds approximately to the n
umber of chiasmata in maize meiosis. These observations are consistent with
a role for Rad51 in the homology search phase of chromosome pairing in add
ition to its known role in meiotic recombination.