In recent years tremendous progress has been made with respect to the enzym
ology of the mitochondrial fatty acid beta-oxidation machinery and defects
therein. Firstly, a number of new mitochondrial beta-oxidation enzymes have
been identified, including very-long-chain acyl-CoA dehydrogenase (VLCAD)
and mitochondrial trifunctional protein (MTP). Secondly, the introduction o
f tandem MS for the analysis of plasma acylcarnitines has greatly facilitat
ed the identification of patients with a defect in fatty acid oxidation (FA
O). These two developments explain why the number of defined FAO disorders
has increased dramatically, making FAO disorders the most rapidly growing g
roup of inborn errors of metabolism. In this review we describe the current
state of knowledge of the enzymes involved in the mitochondrial oxidation
of straight-chain, branched-chain and (poly)unsaturated fatty acyl-CoAs as
well as disorders of fatty acid oxidation. The laboratory diagnosis of thes
e disorders is described, with particular emphasis on the methods used to i
dentify the underlying enzyme defect and the molecular mutations. In additi
on, a simple flowchart is presented as a guide to the identification of mit
ochondrial FAO-disorders. Finally, treatment strategies are discussed brief
ly.