Evidence has been presented [Venkatesan, P., and Kaback, H. R. (1998) Proc.
Natl. Acad. Sci. U.S.A. 95, 9802-9807] that Glu126 (helix IV) and Arg144 (
helix V) which are critical for substrate binding in the lactose permease o
f Escherichia coli are charge paired and therefore in close proximity. To t
est this conclusion more directly, three different site-directed spectrosco
pic techniques were applied to permease mutants in which Glu126 and/or Arg1
44 were replaced with either His or Cys residues. (1) Glu126-->His/Arg144--
>His permease containing a biotin acceptor domain was purified by monomeric
avidin affinity chromatography, and Mn(II) binding was assessed by electro
n paramagnetic resonance spectroscopy. The mutant protein binds Mn(II) with
a KD of about 40 mu M at pH 7.5, while no binding is observed at pH 5.5. I
n addition, no binding is detected with Glu126-->His or Argl44-->His permea
se. (2) Permease with Glu126-->Cys/Arg144-->Cys and a biotin acceptor domai
n was purified, labeled with a thiol-specific nitroxide spin-label, and sho
wn to exhibit spin-spin interactions in the frozen state after reconstituti
on into proteoliposomes. (3) Glu126-->Cys/Arg144-->Cys permease with a biot
in acceptor domain was purified and labeled with a thiol-specific pyrene de
rivative, and fluorescence spectra were obtained after reconstitution into
lipid bilayers. An excimer band is observed with the reconstituted E126C/R1
44C mutant, but not with either single-Cys mutant or when the single-Cys mu
tants are mixed prior to reconstitution. The results provide strong support
for the conclusion that Glu126 (helix IV) and Arg144 (helix V) are in clos
e physical proximity.