The addition of new telomeres to the ends of broken chromosomes, termed chr
omosome healing, has been extensively studied in unicellular organisms; how
ever, its role in the mammalian cell response to double-strand breaks is un
known. A system for analysis of chromosome healing, which involves the inte
gration of plasmid sequences immediately adjacent to a telomere, has been e
stablished in mouse embryonic stem cells. This "marked" telomere contains a
neo gene for positive selection in G418, an I-SceI endonuclease recognitio
n sequence for introducing double-strand breaks, and a herpes simplex virus
thymidine kinase gene for negative selection with ganciclovir for cells th
at have lost the telomere. Transient expression of the I-SceI endonuclease
results in terminal deletions involving telomeric repeat sequences added di
rectly onto the end of the broken chromosome, The sites of addition of the
new telomeres contain short regions of complementarity to telomeric repeat
sequences. The most common site of addition is the last A of the ATAA 3' ov
erhang generated by the I-SceI endonuclease, without the loss of a single n
ucleotide front the end of the chromosome. The next most frequent site invo
lved 5 bp of complementarity, which occurred after the loss of four nucleot
ides from the end of the chromosome. The new telomeres are generally much s
horter than in the parental cell line, and most increase in size with time
in culture. These results demonstrate that chromosome healing is a mechanis
m for repair of chromosome breaks in mammalian cells.