X-ray crystal structures of methylmalonyl-CoA mutase in complexes with subs
trate methylmalonyl-CoA and inhibitors 2-carboxypropyl-CoA and 3-carboxypro
pyl-CoA (substrate and product analogues) show that the enzyme-substrate in
teractions change little during the course of the rearrangement reaction, i
n contrast to the large conformational change on substrate binding. The sub
strate complex shows a 5'-deoxyadenine molecule in the active site, bound w
eakly and not attached to the cobalt atom of coenzyme B-12, rotated and shi
fted from its position in the substrate-free adenosylcobalamin complex. The
position of Tyr alpha 89 close to the substrate explains the stereochemica
l selectivity of the enzyme for (2R)-methylmalonyl-CoA.