The molecular pathology of classical glycogen storage disorders, glycogen s
ynthase deficiency and Fanconi-Bickel syndrome is reviewed. The isolation o
f the respective cDNAs, the chromosomal localization of the genes and the e
lucidation of the genomic organization enabled mutation analysis in most di
sorders. The findings have shed light on the multi-protein structure of the
glucose-6-phosphatase system, the phosphorylase kinase enzymatic complex a
nd the molecular background of the differential tissue expression in debran
ching enzyme deficiency. The immediate practical benefit of these studies i
s our extending ability to predict the outcome of clinical variants and to
offer genetic counseling to most families. The elucidation of the tertiary
structure of these proteins and their structure-function relationship poses
major challenges for the future.