The study of the virus life cycle in infected cells is a methodological cha
llenge due to the small size and diversity of the viral components. Recent
developments on preservation of fine structure and molecular localization h
ave provided a group of powerful methods with wide applications in cell bio
logy and virology. Among the different electron microscopy (EM) techniques
available to visualize viral assembly at the intracellular level, we will f
ocus on conventional ultrathin sections, cryosections, and freeze-substitut
ion. For obtaining molecular information associated to ultrastructure we ha
ve now a group of methods to detect viral proteins (immunogold labeling), a
s well as the viral genome, through the different techniques for detection
of nucleic acids (the enzyme-gold approach, in situ hybridization, and elem
ental mapping). We will illustrate the applications of these methods with e
xamples of viruses that exhibit different levels of structural complexity.
These new approaches help to detect and identify viruses in clinical sample
s and to characterize the virus life cycle and the cellular components invo
lved, to obtain data that could help for a therapeutic intervention, and to
characterize virus-like particles that can be the basis of new and safe va
ccines.