Bose-Einstein condensates in a double-well trap, as well He-3-B baths conne
cted by micropores, have been shown to exhibit Josephson-like tunneling phe
nomena. Unlike the superconductor Josephson junction of phase difference ph
i that maps onto a rigid pendulum of energy cos(phi), these systems map ont
o a momentum-shortened pendulum of energy -root 1-p(phi)(2)cos(phi) and len
gth root 1-p(phi)(2), where p(phi) is a population imbalance between the we
lls/baths. We study here the effect of damping on the four distinct modes o
f the nonrigid pendulum, characterized by distinct temporal mean values, [p
hi] and [p(phi)]. Damping is shown to produce different decay trajectories
to the final equilibrium phi=0=p(phi) state that are characteristic dynamic
signatures of the initial oscillation modes. In particular, damping causes
pi-state oscillations with [phi]=pi to increase in amplitude and pass thro
ugh phase-slip states, before equilibrating. Similar behavior has been seen
in He-3-B experiments. [S1050-2947(99)03207-2].