In this paper, we have briefly summarized our activity in the area of chemi
cal bond manipulation for the integration of nanostructures on a full wafer
scale. Chemical bond manipulation involves a judicious combination of surf
ace phenomena: reactions or diffusion, and growth process such as molecular
beam epitaxy (MBE). Here, we present our results on oxidation, metallizati
on and nitridation and their role in the formation of nanostructures. We fi
nd that oxygen changes the bonding partner from Ge to Si and this phenomeno
n can be controlled by controlling the annealing temperature. We have emplo
yed this phenomenon for the fabrication of novel, multiperiod Si/SiO2/Ge la
yered structure which exhibits interesting light emitting properties. Furth
er, by making use of selective diffusion of cobalt atoms through Ge layers
it is possible to incorporate metallic features into Ge quantum dots. Moreo
ver, it is possible to fabricate Si nanopillars through high temperature re
action of nitric oxide. NO molecules dissociate on the surface,and nitrogen
atoms thus produced form nitride islands. These islands act as protective
masks for the etching of Si by the oxygen atoms, through the desorption of
SiO species. Occurrence of these two simultaneous processes result in the f
ormation of nanometre-sized Si pillars capped by silicon nitride. All these
results emphasize the fact that we can extend information obtained through
traditional surface science experiments for the fabrication of novel struc
tures on a full wafer scale.