Ectomycorrhizal community structure is likely to be influenced by factors s
uch as anthropogenic stress, site history and degree of isolation. Informat
ion about the mycorrhizal community at the level of individual mycorrhizal
roots is needed, since these are the organs for nutrient exchange. To ident
ify mycorrhizal species we used morphotyping based on colour and external a
natomy of the mycorrhizal roots. The morphotypes were further divided using
restriction fragment length polymorphism (RFLP) analysis of the internal t
ranscribed spacer (ITS) region of the ribosomal DNA extracted and amplified
from the mycobionts colonizing single mycorrhizal roots. The communities s
tudied were in two similar 60-year-old Picea abies (L.) Karst. forests loca
ted in southern Sweden approximately 50 km apart at sites with different N
deposition. The level of mycorrhizal colonization was almost 100% at both s
ites, but the total number of mycorrhizas was 30-42% higher at the northern
site. Six morphotypes were distinguished at the northern site with the low
er N deposition (Vedby), and four at the southern site (Skrylle). Some morp
hotypes consisted of several ITS types and identical ITS types were also fo
und in roots assigned to different morphotypes. The RFLP data revealed a to
tal of 16 ITS types. Eleven of these were identified at least to genus by c
omparison with local or regional reference material. Five ectomycorrhizal t
axa, Cenococcum geophilum, Thelephora terrestris, Tylospora fibrillosa, Tyl
opilus fellelus and Ve-95-3 were common to the two sites but the total numb
er of taxa recorded at Vedby was twice as high as at Skrylle. Possible reas
ons for the differences between sites are discussed.