Telomerase is a major new target for the rational design of novel anticance
r agents. We have previously identified anthraquinone-based molecules capab
le of inhibiting telomerase by stabilizing G-quadruplex structures formed b
y the folding of telomeric DNA. In the present study we describe the synthe
sis and biological evaluation of a series of analogous fluorenone-based com
pounds with the specific aims of, first, determining if the anthraquinone c
hromophore is a prerequisite for activity and, second, whether the conventi
onal cytotoxicity inherent to anthraquinone-based molecules may be reduced
by rational design. This fluorenone series of compounds exhibits a broad ra
nge of telomerase inhibitory activity, with the most potent inhibitors disp
laying levels of activity (8-12 mu M) comparable with other classes of G-qu
adruplex-interactive agents. Comparisons with analogous anthraquinone-based
compounds reveal a general reduction in the level of cellular cytotoxicity
. Molecular modeling techniques have been used to compare the interaction o
f fluorenone- and analogous anthraquinone-based inhibitors with a human G-q
uadruplex structure and to rationalize their observed biological activities
.