Human low density lipoproteins (LDL) are the major cholesterol carriers in
the blood. Elevated concentration of LDL is a major risk factor for atheros
clerotic disease. Purified LDL particles appear heterogeneous in images obt
ained with a 400-kV electron cryomicroscope. Using multivariate statistical
and cluster analyses, an ensemble of randomly oriented particle images has
been subdivided into homogeneous subpopulations, and the largest subset wa
s used for three-dimensional reconstruction, In contrast to the general bel
ief that below the lipid phase-transition temperature (30 degrees C) LDL ar
e quasi-spherical microemulsion particles with a radially layered core-shel
l organization, our three-dimensional map shows that LDL have a well-define
d and stable organization, Particles consist of a higher-density outer shel
l and lower-density inner lamellae-like layers that divide the core into co
mpartments. The outer shell consists of apolipoprotein B-100, phospholipids
, and some free cholesterol.