A procedure for the separation of fatty acids, after their derivatization a
s fatty acid naphthacyl esters, by reverse-phase high performance liquid ch
romatography is described. A reproducible resolution (50 min), shorter than
former HPLC analyses, of a standard mixture of fatty acid naphthacyl ester
s (25 fatty acids; C7:0 - C22:6, n - 3), was achieved by a ternary elution
gradient of methanol-acetonitrile-water. Compared with gas chromatography.
HPLC analysis of fatty acid naphthacyl esters showed similar percentages of
molar distribution of long-chain fatty acids (greater than or equal to 14
carbons). The separation was monotered by UV absorbance at 246 nm. which wa
s highly sensitive (the detection limit was about 0.1 ng), did not destroy
the fatty acid naphthacyl esters and thus allowed individual recovery for f
urther analysis (specific radioactivity determination or positional isomer
identification). This preparative HPLC method provides, therefore, a useful
process for the study of fatty acid metabolism in biological systems.