A random amplified polymorphic DNA (RAPD) assay coupled to a fast and repro
ducible cell lysis method from Lactobacillus colonies were developed to typ
e lactobacilli of different strains and species, with the aim of precisely
enumerating each of the different Lactobacillus strains inoculated in a nut
rient-rich environment, such as sausage meat batter. Colonization assays we
re carried out in an aseptic meat fermentation system for up to 14 d and th
e inoculated strains were challenged with mixtures of wild lactobacilli. Th
e proportion of inoculated strains remaining at different times was compare
d with the total number of lactobacilli grown on MRS agar by RAPD. The colo
nization rate of the different strains tested was very different. The RAPD-
fast lysis method developed is simple and, with a low cost per assay, could
also be applied to other food fermentations.