MSH2-MSH3 directs the repair of insertion/deletion loops of up to 13 nucleo
tides in vivo and in vitro, To examine the biochemical basis of this repair
specificity, we characterized the mispair binding and ATPase activity of h
MSH2-hMSH3. The ATPase was found to be regulated by a mismatch-stimulated A
DP --> ATP exchange, which induces a conformational transition by the prote
in complex. We demonstrated strong binding of hMSH2-hMSH3 to an insertion/d
eletion loop containing 24 nucleotides that is incapable of provoking ADP -
-> ATP exchange, suggesting that mismatch recognition appears to be necessa
ry but not sufficient to induce the intrinsic ATPase. These studies support
the idea that hMSH2-hMSH3 functions as an adenosine nucleotide-regulated m
olecular switch that must be activated by mismatched nucleotides for classi
cal mismatch repair to occur.