Chalcone synthase (CHS) is pivotal for the biosynthesis of flavonoid antimi
crobial phytoalexins and anthocyanin pigments in plants, It produces chalco
ne by condensing one p-coumaroyl- and three malonyl-coenzyme A thioesters i
nto a polyketide reaction intermediate that cyclizes, The crystal structure
s of CHS alone and complexed with substrate and product analogs reveal the
active site architecture that defines the sequence and chemistry of multipl
e decarboxylation and condensation reactions and provides a molecular under
standing of the cyclization reaction leading to chalcone synthesis, The str
ucture of CHS complexed with resveratrol also suggests how stilbene synthas
e, a related enzyme, uses the same substrates and an alternate cyclization
pathway to form resveratrol, By using the three-dimensional structure and t
he large database of CHS-like sequences, we can identify proteins likely to
possess novel substrate and product specificity. The structure elucidates
the chemical basis of plant polyketide biosynthesis and provides a framewor
k for engineering CHS-like enzymes to produce new products.