Adenylyl cyclase (AC) converts adenosine triphosphate (ATP) to cyclic adeno
sine monophosphate, a ubiquitous second messenger that regulates many cellu
lar functions. Recent structural studies have revealed much about the struc
ture and function of mammalian AC but have not fully defined its active sit
e or catalytic mechanism. Four crystal structures were determined of the ca
talytic domains of AC in complex with two different ATP analogs and various
divalent metal ions. These structures provide a model for the enzyme-subst
rate complex and conclusively demonstrate that two metal ions bind in the a
ctive site. The similarity of the active site of AC to those of DNA polymer
ases suggests that the enzymes catalyze phosphoryl transfer by the same two
-metal-ion mechanism and likely have evolved from a common ancestor.