Nj. Adams et al., COMPLETE CODING SEQUENCE OF HEPATITIS-C VIRUS GENOTYPE 6A, Biochemical and biophysical research communications, 234(2), 1997, pp. 393-396
Hepatitis C virus (HCV) genotype 6a is found in a restricted part of S
outh East Asia, including Hong Kong, Macau and Vietnam. We determined
the full length coding sequence of a type 6a isolate (EUHK2) obtained
from a Hong Kong blood donor. The sequence of EUHK2 contained a single
open reading frame coding for a polyprotein of 3018 amino acids, with
in the range of 3008 to 3037 for other HCV genotypes. The full length
sequence of EUHK2 showed 30.3%-32.9% nucleotide (24.3%-29.4% amino aci
d) sequence divergence from genotypes 1-4, but only 27.7% (20.7% amino
acid) divergence from JK046 (''type 11a''). These similarity values w
ere intermediate between those of other HCV genotypes (minimum 28.4%)
and between subtypes (maximum 25%). The close evolutionary relationshi
p of EUHK2 with JK046 was further indicated by their grouping together
by phylogenetic analysis. (C) 1997 Academic Press.