Conceptually, the initiation of autoimmune disease can be described as a th
ree-stage process involving both genetic and environmental influences. This
process begins with the development of an autoimmune cellular repertoire,
followed by activation of these autoreactive cells in response to a localiz
ed target and, finally, the immune system's failure to regulate these self
reactive constituents. Viruses have long been associated with inciting auto
immune disorders. Two mechanisms have been proposed to explain how a viral
infection can overcome immunological tolerance to self-components and initi
ate an organ-specific autoreactive process; these mechanisms are molecular
mimicry and bystander activation. Both pathways, as discussed here, could p
lay pivotal roles in the development of autoimmunity without necessarily ex
cluding each other. Transgene technology has allowed us and others to exami
ne more closely the roles of these mechanisms in mice and to dissect the re
quirements for initiating disease. These results demonstrate that bystander
activation is the most likely explanation for disease development. Additio
nal evidence suggests a further role for viruses in the reactivation and ch
ronicity of autoimmune diseases. In this scenario, a second invasion by a p
reviously infecting virus may restimulate already existing autoreactive lym
phocytes, and thereby contribute to the diversity of the immune response.