Solvent-exposed tryptophans probe the dynamics at protein surfaces

Citation
Gs. Lakshmikanth et G. Krishnamoorthy, Solvent-exposed tryptophans probe the dynamics at protein surfaces, BIOPHYS J, 77(2), 1999, pp. 1100-1106
Citations number
38
Categorie Soggetti
Biochemistry & Biophysics
Journal title
BIOPHYSICAL JOURNAL
ISSN journal
00063495 → ACNP
Volume
77
Issue
2
Year of publication
1999
Pages
1100 - 1106
Database
ISI
SICI code
0006-3495(199908)77:2<1100:STPTDA>2.0.ZU;2-O
Abstract
The dynamics of single tryptophan (W) side chain of protease subtilisin Car lsberg (SC) and myelin basic protein (MBP) were used for probing the surfac e of these proteins. The W side chains are exposed to the solvent, as shown by the extent of quenching of their fluorescence by KI. Time-resolved fluo rescence anisotropy measurements showed that the rotational motion of W is completely unhindered in the case of SC and partially hindered in the case of MBP. The rotational correlation time (phi) associated with the fast loca l motion of W did not scale linearly with the bulk solvent viscosity (eta) in glycerol-water mixtures. In contrast, phi values of either W side chains in the denatured proteins or the free W scaled almost linearly with eta, a s expected by the Stokes-Einstein relationship. These results were interpre ted as indicating specific partitioning of water at the surface of the prot eins in glycerol-water mixtures.