Estimation of dynamic parameters from NMR relaxation data using the Lipari-Szabo model-free approach and Bayesian statistical methods

Citation
M. Andrec et al., Estimation of dynamic parameters from NMR relaxation data using the Lipari-Szabo model-free approach and Bayesian statistical methods, J MAGN RES, 139(2), 1999, pp. 408-421
Citations number
71
Categorie Soggetti
Chemistry & Analysis","Physical Chemistry/Chemical Physics
Journal title
JOURNAL OF MAGNETIC RESONANCE
ISSN journal
10907807 → ACNP
Volume
139
Issue
2
Year of publication
1999
Pages
408 - 421
Database
ISI
SICI code
1090-7807(199908)139:2<408:EODPFN>2.0.ZU;2-8
Abstract
In order to analyze NMR relaxation data in terms of parameters which descri be internal motion, one must first obtain a description of the overall tumb ling of the macromolecule in solution. Methods currently used to estimate t hese global parameters may not always provide reliable estimates of their v alues and uncertainties. In this paper, we present a general data analysis formalism based on products of Bayesian marginal probability densities whic h can be used to efficiently combine the information content from multiple experiments, such as R-1, R-2, and NOE data collected at multiple magnetic field strengths, or data from cross-correlation or rotating frame relaxatio n dispersion experiments. Our approach allows the estimation of global tumb ling and internal dynamical parameters and their uncertainties without some of the assumptions which are made in the commonly-used methods for model-s election and global parameter estimation. Compared to an equivalent classic al statistical approach, the Bayesian method not only is more computational ly efficient, but also provides greater insight into the information conten t of the data. We demonstrate that this approach can be used to estimate bo th the isotropic rotational correlation time in the context of the original and "extended" Lipari-Szabo formalisms [Lipari & Szabo, J. Am. Chem. Sec. 1982, 104, 4546; Clore et al., J. Am. Chem. Sec. 1990, 112, 4989], as well as the rotational diffusion coefficients for axially symmetric anisotropic tumbling. (C) 1999 Academic Press.