The successful application of the maize transposable element system Ac
/Ds as a genome mutagen in heterologous plant species has recently pro
ved the versatility and power of this technique in plant molecular bio
logy. However, the frequency of Ac/Ds transposition is considerably lo
wer in Arabidopsis thaliana than in most other dicot plant species tha
t have been studied. Since previous research has established that tran
scripts derived from monocot genes can be alternatively processed in d
icot plants, we have investigated both the efficiency of intron splici
ng and polyadenylation of the maize Ac transposase pre-mRNA in Arabido
psis thaliana, Nicotiana tabacum, Nicotiana plumbaginifolia and Zea ma
ys. In this paper, we demonstrate that intron 4 is alternatively splic
ed within Arabidopsis, using cryptic 5' and 3' splice sites within the
intron sequence, leading to a heterogeneous population of full length
transposase transcript. Furthermore, analysis of transposase transcri
pt polyadenylation revealed that at least four alternative poly(A) sit
es were utilized between introns 2 and 3, resulting in truncated trans
posase transcripts. Finally, by Northern blotting, we established that
the truncated transposase transcript was the most abundant form of tr
ansposase message in Arabidopsis. In contrast to these findings, the a
lternative splicing and premature polyadenylation of Ac message in Ara
bidopsis was unparalleled in the other species examined. We suggest th
at the poor frequency of transposition of Ac in Arabidopsis may be in
part due to the low quantity of correctly processed transposase transc
ript available in this species.