Reliable double immunofluorescence labeling for confocal laser scanning mic
roscopy requires good separation of the signals generated by the fluorochro
mes. We have successfully overcome the limitation of a single argon ion las
er in achieving effective excitation of dyes with well-separated emission s
pectra by employing the novel sulfonated rhodamine fluorochromes designated
Alexa 488 and Alexa 568. The more abundant antigen was visualized using th
e red-emitting Alexa 568, with amplification of the signal by a biotinylate
d bridging antibody and labeled streptavidin. This was combined with the gr
een-emitting Alexa 488, which yielded brighter images than fluorescein but
exhibited comparable photodegradation. With appropriate controls to ensure
the absence of crosstalk between fluorescence channels, these dyes permitte
d unequivocal demonstration of colocalization. This combination of fluoroch
romes may also offer advantages for users of instruments equipped with alte
rnative laser systems.