Isoelectric focusing has been used to achieve the anatytical- and preparati
ve-scale separation of the enantiomers of amphoteric analytes. By consideri
ng the simultaneous multiple equilibria involved in the chiral recognition
process, a model has been developed to describe the magnitude of the Delta
pI value that develops between the enantiomers in the presence of a nonchar
ged chiral resolving agent, such as a noncharged cyclodextrin. Theoretical
analysis of the model indicates that three kinds of IEF enantiomer separati
ons are possible: aniono-selective and cationo-selective, when only the ide
ntically charged forms of the enantiomers bind selectively to the resolving
agent, and due-selective, when the differently charged forms of the enanti
omers bind selectively to the resolving agent. The model predicts that the
Delta pI vs cyclodextrin concentration curves approach limiting Delta pI va
lues which can be as large as 0.1, even when the binding constants of the e
nantiomers differ only by 10%. The parameters of the model can be readily d
etermined by free solution capillary electrophoretic or pressure-mediated c
apillary electrophoretic experiments. The validity of the proposed model ha
s been tested with hydroxypropyl beta-cyclodextrin as resolving agent and d
ansyl phenylalanine as probe. Capillary IEF enantiomer separations have bee
n achieved using both ampholytes and binary propionic acid-serine buffers (
Bier's buffers). Preparative-scale IEF enantiomer separations with producti
on rates as high as 1.3 mg/h have been achieved in an Octopus continuous fr
ee-now electrophoretic system.