Aquaporin (AQP) water channel proteins are tetrameric assemblies of individ
ually active similar to 30 kDa subunits, AQP4 is the predominant water chan
nel protein in blain, but immunoblotting of native tissues has previously y
ielded multiple poorly resolved bands. AQP4 is known to encode two distinct
mRNAs with different translation initiating methionines, M1 or M23. Using
SDS-PAGE urea gels and immunoblotting with anti-peptide antibodies, four po
lypeptides were identified in brain and multiple other rat tissues with the
following levels of expression: 32 kDa > 34 kDa > 36 kDa > 38 kDa, The 34
and 38 kDa polypeptides react with an antibody specific for the N-terminus
of the hi I isoform, and 32 and 34 kDa correspond to the shorter M23 isofor
m. Immunogold electron microscopic studies with rat cerebellum cryosections
demonstrated that the 34 kDa polypeptide colocalizes in perivascular astro
cyte endfeet where the 32 kDa polypeptide is abundantly expressed. Velocity
sedimentation, cross-linking, and immunoprecipitation analyses of detergen
t-solubilized rat brain revealed that the 32 and 34 kDa polypeptides reside
within heterotetramers. Immunoprecipitation of AQP4 expressed in Xenopus l
aevis oocytes demonstrated that heterotetramer formation reflects the relat
ive expression levels of the 32 and 34 kDa polypeptides; however, tetramers
containing different compositions of the two polypeptides exhibit similar
water permeabilities. These studies demonstrate that AQP4 heterotetramers a
re formed from two overlapping polypeptides and indicate that the 22-amino
acid sequence at the N-terminus of the 34 kDa polypeptide does not influenc
e water permeability but may contribute to membrane trafficking or assembly
of arrays.