Aedes aegypti metaphase chromosome landmarks have been developed so th
at each chromosome of the haploid genome can be unambiguously identifi
ed and oriented by fluorescence in situ hybridization (FISH) and digit
al imaging microscopy. The FISH tags were derived from three cosmids t
hat contain repetitive Ae. aegypti sequences and their unique FISH tag
ging characteristics are demonstrated. The sequence of the three chrom
osomal tags revealed that the chromosome 1 tag is an 18S fragment from
the ribosomal cistron, and the other two chromosomal tags are repeats
found in Ae. aegypfi with no apparent similarity to known sequences.
A single plasmid that contains the three chromosome tag sequences has
been constructed to simplify future FISH physical mapping.