Until recently many clinical trials of functional gastrointestinal disorder
s (FGIDs) suffered from important weaknesses in trial design, study executi
on, and data analysis. This makes it difficult to determine whether truly e
fficacious therapies exist for these disorders. One of the important method
ologic problems is the absence of validated outcome measures and lack of co
nsensus among stakeholders on how to measure outcome. Currently much of the
effort is being put into the development of validated outcome measures for
several of the FGIDs. The randomized, controlled trial with parallel group
s is the design of choice. In this report, guidelines are given for the bas
ic architecture of intervention studies of FGIDs. Further studies on design
issues are required to ensure the recommendations will become evidence bas
ed in the future.