Characterization of the DNA binding and bending HMG domain of the yeast hypoxic repressor Rox1

The yeast Rox1 hypoxic transcriptional repressor protein binds to and bends a specific DNA sequence through an HMG domain located at the N-terminus, T o better understand the structure of Rox1 and how it interacts with DNA, 38 missense mutations in the HMG domain were isolated through a combination o f random and site-directed mutageneses, the latter directed to two Ile resi dues that play an important role in DNA recognition and bending by HMG doma ins. The mutants were characterized in terms of their ability to repress th e hypoxic gene ANB1 and the auto-repressed ROX1 gene in vivo. The mutant HM G domains were fused to maltose binding protein and expressed in and purifi ed from Escherichia coil and their relative affinities for DNA and ability to bend DNA were determined. A model of the structure of the Rox1 HMG domai n was derived using sequence similarities between Rox1 and the human protei n SRY, the structure of which has been determined. The results of the mutat ional analysis are interpreted in terms of the model structure of Rox1.