Bacterial artificial chromosome (BAC) clones were assigned within the pig m
ajor histocompatibility complex (Mhc) by polymerase chain reaction-screenin
g and Southern blot hybridization using sequence-tagged site (STS) markers
and BAC end-rescued sequences. In all, 35 BAC clones were discovered contai
ning 12 anchor genes of the SLA class I region and two genes of the SLA cla
ss III region. Twenty of these 35 clones comprised two distinct class I gen
e clusters, each spanning about 100 kilobases. One cluster enclosed three c
lass I related genes (SLA-6 to -8) and two genes (MIC-1 and MIC-2) more dis
tantly related to class I. The other cluster enclosed typical class I genes
, of which three (SLA-1, -2, and -3) were transcribed by fibroblasts homozy
gous for the H01 haplotype which we used to construct a pig BAC library. Or
dered clones are certainly helpful in isolating agronomically, biologically
, and medically important genes. They would also be useful for inducing gen
etic modifications in pig cell lines.