A. Mutirangura et al., Identification of distinct regions of allelic loss on chromosome 13q in nasopharyngeal cancer from paraffin embedded tissues, INT J CANC, 83(2), 1999, pp. 210-214
Our main purpose was to identify tumor suppressor gene loci on chromosome 1
3 responsible for nasopharyngeal cancer (NPC) development by analyzing loss
of heterozygosity (LOH) and RE protein expression in paraffin embedded tis
sues. Normal and tumor DNA were extracted from microdissected samples, and
their whole genomes were amplified using degenerate oligonucleotide primers
. The polymerase chain reaction (PCR) products were analyzed by repeated am
plification using primers derived from 16 microsatellite regions spanning t
he long arm of this chromosome. Among 50 informative cases, LOH was observe
d in 44 tumors. Thirty-one tumors displayed partial loss and provided an in
formative basis for detailed deletion mapping. Three minimal regions of los
s were delineated; the first flanked by D13S120 and D13S219, the second by
D13S126 and D13S119, and the third by D13S137 and 13qter, These 3 regions w
ere linked to BRCA2 on 13q12, RBI on 13q14, and 13q14.3-ter, respectively.
Seven and 4 cases showed LOH either on 13q12 or 13q14, respectively. Ninete
en cases showed LOH of both loci separately. One NPC displayed 13q12 and 13
q14.3-ter LOH. RE protein expression was detectable in 76% of the cases. Te
n out of 15 cases with the allelic losses limited to 13q14 showed RE protei
n expression. Contrasting that, 6 out of 7 cases devoid of RE protein expre
ssions showed 13q14LOH. In conclusion, 13qLOH, involving 3 tumor suppressor
gene loci, appears to be a frequent genetic event occurring during NPC dev
elopment. However, other tumor suppressor genes besides RBI, may be respons
ible for the majority of 13q14LOH. (C) 1999 Wiley-Liss. Inc.