Silencing is a universal form of transcriptional regulation in which region
s of the genome are reversibly inactivated by changes in chromatin structur
e. Sir2 (Silent Information Regulator) protein is unique among the silencin
g factors in Saccharomyces cerevisiae because it silences the rDNA as well
as the silent mating-type loci and telomeres. Discovery of a gene family of
Homologues of Sir Two (HSTs) in organisms from bacteria to humans suggests
that SIR2's silencing mechanism might be conserved. The Sir2 and I-ist pro
teins share a core domain, which includes two diagnostic sequence motifs of
unknown function as well as four cysteines of a putative zinc finger. We d
emonstrate by mutational analyses that the conserved core and each of its m
otifs are essential for Sir2p silencing. Chimeras between Sir2p and a human
Sir2 homologue (hSidAp) indicate that this human protein's core can substi
tute for that of Sir2p, implicating the core as a silencing domain. Immunof
luorescence studies reveal partially disrupted localization, accounting for
the yeast-human chimeras' ability to function at only a subset of Sir2p's
target loci. Together, these results support a model for the involvement of
distinct Sir2p-containing complexes in HM/telomeric and rDNA silencing and
that HST family members, including the widely expressed hSir2A, may perfor
m evolutionarily conserved functions.