Identification of bacterial pathogens in patients with endophthalmitis by 16S ribosomal DNA typing

PURPOSE: To determine whether sequence analysis of 16S ribosomal DNA (rDNA) can be used to detect bacterial pathogens in patients with postoperative e ndophthalmitis. METHODS: In 10 eyes of 10 patients, vitreous specimens were collected for c ulture and rDNA typing. Variable segments of each ribosomal DNA specimen we re amplified by polymerase chain reaction (PCR), sequenced, and aligned by BLAST, a computer alignment program, against sequences in GenBank at the Na tional Institutes of Health. RESULTS: Specimens were available from five eyes with bacterial endophthalm itis diagnosed by Gram stain or culture. Amplified 16s rDNA sequences from the eyes of three patients were identical to microbiologic results, Polymer ase chain reaction results were negative in two cases in which unusual orga nisms were detected. All five control specimens from patients with nonbacte rial endophthalmitis or uveitis were PCR negative. Approximately drs to 72 hours are required under ideal conditions for final species identification with this ribosomal typing technique. CONCLUSIONS: 16S rDNA typing shows potential as a relatively rapid techniqu e for identifying bacteria in vitreous samples, (Am J Ophthalmol 1999;128: 511-512. (C) 1999 by Elsevier Science Inc All rights reserved.).