Motivated by experiments in which a polynucleotide is driven through a prot
einaceous pore by an electric field, we study the diffusive motion of a pol
ymer threaded through a narrow channel with which it may have strong intera
ctions. We show that there is a range of polymer lengths in which the syste
m is approximately translationally invariant, and we develop a coarse-grain
ed description of this regime. From this description, general features of t
he distribution of times for the polymer to pass through the pore may be de
duced. We also introduce a more microscopic model. This model provides a ph
ysically reasonable scenario in which, as in experiments, the polymer's spe
ed depends sensitively on its chemical composition, and even on its orienta
tion in the channel. Finally, we point out that the experimental distributi
on of times for the polymer to pass through the pore is much broader than e
xpected from simple estimates, and speculate on why this might be.