Telomerase is a ribonucleoprotein that adds 5'-d(T-TAGGG)-3' hexameric repe
ats onto the 3' ends of chromosomes. High telomerase activity has been asso
ciated with immortal cells, transformed cells, mitogenic stimulation, and p
roliferative diseases. It is not clear what phenotype would be observed by
transient inhibition of telomerase. Studies were designed to inhibit telome
rase activity using a series of S-ODN telomere sequence motifs. The studies
evaluated the length, hydrogen bonding, and sequence requirements of telom
erase inhibition using the TRAP assay and a bioassay measuring cell viabili
ty following exposure to the compounds. In addition, we have also studied t
he role of the 3' end and secondary structure of telomere mimics on telomer
ase inhibition. Observations reveal that sensitivity to the S-ODNs may not
require hybridization to an antisense target but required guanine nucleotid
es on the 3' end for cells in culture and telomerase inhibition in vitro. T
he importance of H bonding and the requirement for a free 3' end for the ac
tivity of these compounds has also been demonstrated. However, transient in
hibition of telomerase is not cytotoxic to all immortal cells and is not su
fficient to explain the mechanism of cytotoxicity of these short oligonucle
otides. (C) 1999 Academic Press.