Genetic causes of premature ovarian failure (POF) include X chromosome dele
tions and fragile X (FRAXA) premutations. While screening a cohort of women
with POF for FRAXA premutations, a more distal trinucleotide repeat, FRAXE
, was also tested. We found an unexpected excess of FRAXE alleles with appa
rently fewer than 11 repeats in the POF group. However, sequence analysis o
f these alleles showed that the excess was caused by three females who carr
y cryptic deletions in FMR2, the gene associated with FRAXE. We propose tha
t microdeletions within FMR2 may be a significant cause of premature ovaria
n failure, being found in 1.5% of women with the condition, and in only 0.0
4% of the general female population. The deletions may affect transcription
of either FMR2 or an adjacent gene.