The hypothesis that soda lakes provide a refugium for relict microbial comm
unities of epicontinental origin was put to test by studying the functional
diversity of such communities. Alkaliphilic communities develop in water a
lmost saturated with soda and contain representatives of major trophic grou
ps. Primary organic matter producers are represented by various cyanobacter
ia having optimal growth regions defined in pH-alkalinity-mineralization co
ordinates. Eukaryotic microalgae occur merely as minor but persistent compo
nents. Investigation of the anaerobic degradation pathway led to the descri
ption of several new genera, Natroniella, Tindallia, and Natronoincola, whi
ch participate primarily in acetogenesis. The hydrogen sink in the communit
y is provided by alkaliphilic hydrogenotrophic sulfate reducers Desulfonatr
onovibrio and Desulfonatronum. The anaerobic oxidative filter depends on a
phototrophic Ectothiorhodospiraceae with a new genus Thiorhodospira and a n
ew heliobacterium Heliospira. The aerobic filter comprises the H(2-)utilizi
ng and sulfur-oxidizing bacterium Natronohydrogenobacter thiooxidans, heter
otrophic and obligately autotrophic sulfur-oxidizing bacteria, methane-oxid
izing Methylobacter alcaliphilus and alkaliphilic Methylomicrobium sp. able
to oxidize methane and ammonia. With the addition of proteobacteria, natro
no archaebacteria, spirochetes, and the alkaliphilic thermatogas recently d
escribed, the alkaliphilic community attained sufficient diversity to repre
sent all major functional trophic groups required to close up major biogeoc
hemical cycles as well as the main branches of the phylogenetic tree of the
prokaryotes. This is enough to correspond to an evolutionarily open commun
ity able to represent a likely center of the diversification of inland micr
oflora.