In a previous study of the genus Phicaria and its relationship to Peziza, t
he molecular phylogeny that was generated suggested Peziza is paraphyletic
. The objective of this study was to explore this problem by examining a la
rger sample of Peziza species, by increasing the length of DNA sequence ana
lyzed, and by including in the analysis additional genera in the Pezizaceae
. DNA sequences were obtained from the 5' internal transcribed spacer regio
n, the dr divergent domains D1 and D2 of the 28S gene, and most of the 18S
gene of the nuclear-encoded ribosomal DNA. Maximum-likelihood analysis of t
hese sequences indicates that Peziza is composed of at least two distinct c
lades: the first clade contains taxa with mostly smooth to finely-roughened
, eguttulate ascospores and Oedocephalum anamorphs, the second clads contai
ns mostly taxa with warted, guttulate ascospores and Chromelosporium anamor
phs. Separate generic status for Kimbropezia is weakly supported by the phy
logenetic analysis and Peziza quelepidotia is sufficiently distinct to reta
in its original status as Lepidotia hispida. This study is the first to sug
gest a phylogenetic link between the mitotic fungus Glischroderma , and the
genera Scabropezia and Pachyphloeus. Other hypogeous species that belong i
n the Pezizaceae include Cazia flexiascus, Terfezia arenaria and Terfezia t
erfezioides.