Studies in both humans and in animal models of specific disorders suggest t
hat polymorphisms of multiple genes are involved in conferring either a pre
disposition to or protection from autoimmune diseases. Genes encoding polym
orphic proteins that regulate immune responses or the rates and extent of m
etabolism of certain chemical structures have been the focus of much of the
research regarding genetic susceptibility. We examine the type and strengt
h of evidence concerning genetic factors and disease etiology, drawing exam
ples from a number of autoimmune diseases. Twin studies of rheumatoid arthr
itis (RA), systemic lupus erythematosus (SLE), type I diabetes, and multipl
e sclerosis (MS) indicate that disease concordance in monozygotic twins is
4 or more times higher than in dizygotic twins. Strong familial association
s (odds ratio ranging from 5-10) are seen in studies of MS, type I diabetes
, Graves disease, discoid lupus, and SLE. Familial association studies have
also reported an increased risk of several systemic autoimmune diseases am
ong relatives of patients with a systemic autoimmune disease. This associat
ion may reflect a common etiologic pathway with shared genetic or environme
ntal influences among these diseases. Recent genomewide searches in RA, SLE
, and MS provide evidence for multiple susceptibility genes involving major
histocompatibility complex (MHC) and non-MHC loci; there is also evidence
that many autoimmune diseases share a common set of susceptibility genes. T
he multifactorial nature of the genetic risk factors and the low penetrance
of disease underscore the potential influence of environmental factors and
gene-environment interactions on the etiology of autoimmune diseases.