Crystal structure of the EF-hand parvalbumin at atomic resolution (0.91 angstrom) and at low temperature (100 K). Evidence for conformational multistates within the hydrophobic core

Citation
Jp. Declercq et al., Crystal structure of the EF-hand parvalbumin at atomic resolution (0.91 angstrom) and at low temperature (100 K). Evidence for conformational multistates within the hydrophobic core, PROTEIN SCI, 8(10), 1999, pp. 2194-2204
Citations number
44
Categorie Soggetti
Biochemistry & Biophysics
Journal title
PROTEIN SCIENCE
ISSN journal
09618368 → ACNP
Volume
8
Issue
10
Year of publication
1999
Pages
2194 - 2204
Database
ISI
SICI code
0961-8368(199910)8:10<2194:CSOTEP>2.0.ZU;2-3
Abstract
Several crystal structures of parvalbumin (Parv), a typical EF-hand protein , have been reported so far for different species with the best resolution achieving 1.5 Angstrom. Using a crystal grown under microgravity conditions , cryotechniques (100 K), and synchrotron radiation, it has now been possib le to determine the crystal structure of the fully Ca2+-loaded form of pike (component pI 4.10) Parv.Ca-2 at atomic resolution (0.91 Angstrom). The av ailability of such a high quality structure offers the opportunity to contr ibute to the definition of the validation tools useful for the refinement o f protein crystal structures determined to lower resolution. Besides a bett er definition of most of the elements in the protein three-dimensional stru cture than in previous studies, the high accuracy thus achieved allows the detection of well-defined alternate conformations, which are observed for 1 6 residues out of 107 in total. Among them, six occupy an internal position within the hydrophobic core and converge toward two small buried cavities with a total volume of about 60 Angstrom(3). There is no indication of any water molecule present in these cavities. It is probable that at temperatur es of physiological conditions there is a dynamic interconversion between t hese alternate conformations in an energy-barrier dependent manner. Such mo tions for which the amplitudes are provided by the present study will be as sociated with a time-dependent remodeling of the void internal space as par t of a slow dynamics regime (millisecond timescales) of the parvalbumin mol ecule. The relevance of such internal dynamics to function is discussed.