G. Pals et al., A rapid and sensitive approach to mutation detection using real-time polymerase chain reaction and melting curve analyses, using BRCA1 as an example, MOL DIAGN, 4(3), 1999, pp. 241-246
Background: The detection of 2 recurrent mutations in the BRCA1 gene (Ashke
nazi Jewish and Dutch populations) was studied with real-time polymerase ch
ain reaction (PCR) and melting curve analyses.
Methods: PCR products were designed around the 185delAG in exon 2 and the s
ingle-base substitution 2841G-->T in exon 11. Hybridization probe sets were
designed for both PCR products, with each probe overlapping the specific m
utation. The exon 11 probe set also covered another mutation, the 2814insA.
The 3' end of the 5' probe was labeled with fluorescein isothiocyanate and
the 5' end of the 3' probe with LightCycler Red 640 (Roche Diagnostics, In
dianapolis, IN).
Results: The 185del and 2841G mutations were easily detected with the hybri
dization probes, resulting in dual peaks for heterozygotes in melting curve
analyses. The differences in melting characteristics of the heteroduplexes
in heterozygotes were not detectable with SYBR Green I.
Conclusion: For known mutations, melting curve analyses using hybridization
-specific probes provide a sensitive, rapid, and efficient approach to muta
tion detection.