An improved pulsed-field electrophoresis program was developed to study dif
ferently sized chromosomes within the genus Saccharomyces. The number of ch
romosomes in the type strains was shown to be nine in Saccharomyces castell
ii and Saccharomyces dairenensis, 12 in Saccharomyces servazzii and Sacchar
omyces unisporus, 16 in Saccharomyces exiguus and seven in Saccharomyces kl
uyveri. The sizes of individual chromosomes were resolved and the approxima
te genome sizes were determined by the addition of individual chromosomes o
f the karyotypes. Apparently. the genome of S. exiguus, which is the only S
accharomyces sensu late yeast to contain small chromosomes, is larger than
that of Saccharomyces cerevisiae. On the other hand, other species exhibite
d genome sizes that were 10-25% smaller than that of S. cerevisiae. Well-de
fined karyotypes represent the basis for future genome mapping and sequenci
ng projects, as well as studies of the origin of the modern genomes.