The western black-legged tick, Ixodes pacificus, is a primary vector of the
spirochaete, Borrelia burgdorferi, that causes Lyme disease. We used varia
tion in a 355-bp DNA portion of the mitochondrial cytochrome oxidase III ge
ne to assess the population structure of the tick across its range from Bri
tish Columbia to southern California and east to Utah. Ixodes pacificus sho
wed considerable haplotype diversity despite low nucleotide diversity. Maxi
mum parsimony and isolation-by-distance analyses revealed little genetic st
ructure except between a geographically isolated Utah locality and all othe
r localities. Loss of mtDNA polymorphism in Utah ticks is consistent with a
post-Pleistocene founder event. The pattern of genetic differentiation in
the continuous part of the range of Ixodes pacificus reinforces recent reco
gnition of the difficulties involved in using genetic frequency data to inf
er gene flow and migration.