An updated diatom (Bacillariophyta) checklist for the Great Lakes is provid
ed. The present checklist supplants the preliminary checklist published in
The Journal for Great Lakes Research in 1978 and effectively represents a 2
0-year update. A series of procedures were used in this update which includ
ed: a reexamination of taxa reported in the 1978 list, additions of taxa re
ported from the Great Lakes during the past 20 years, and a revision of tax
onomy, commensurate with systematic and nomenclatural changes which have oc
curred primarily during the past 8 years. 1488 diatom species or subordinat
e taxa are considered to be correct reports from the Great Lakes out of the
2188 diatom entities reported in the list. Of the 124 genera reported 105
are considered to be names in current use. The number of diatom species rep
orted represents a 16.5% increase and the number of genera reported represe
nts a 78% increase over those reported in the 1978 checklist. 13% of the sp
ecies reported and 32% of the genera reported are due solely to nomenclatur
al changes. Results indicate that Great Lakes diatoms are a biodiverse comp
onent of the ecosystem, commensurate with the wide range of habitats found
in the system. The present checklist indicates that most of the newly added
species are primarily benthic or periphytic in nature and these represent
largely understudied habitats. These results suggest that the present check
list may only represent approximately 70% or less of the extant diatom flor
a of the Great Lakes system.