The filamentous diazotrophic cyanobacterium Nodularia forms water blooms ea
ch year in the Baltic Sea. Filaments isolated from such water blooms vary i
n their trichome width, degree of coiling, and properties of their gas vesi
cles; previously, these characters have been used to classify individuals t
o species level. To test the validity of such a phenotypic classification,
we determined the nucleotide sequences for a region of the phycocyanin locu
s that includes a noncoding intergenic spacer (PC-IGS), the IGS between two
adjacent copies of the gvpA gene (which encodes the main structural gas ve
sicle protein) and the rDNA internal transcribed spacer (rDNA-ITS), for 13
clonal Nodularia isolates from the Baltic Sea during August 1994. The compl
ete 16S-rDNA sequence was determined for three isolates and was found to be
identical in each of them, Molecular sequences for noncoding regions of th
e genome were used to assign isolates to three groups on the basis of PC-IG
S, two groups on the basis of gvpA-IGS, and three groups on the basis of rD
NA-ITS. No consistent correlation was found between genotype and any of the
phenotypic features examined, and no link was found between any of these f
eatures themselves, indicating that these characters are not useful for pla
cing Nodularia isolates into meaningful taxonomic groups. The PC-IGS, gvpA-
IGS, and rDNA-ITS genotypic groupings were not congruent. This might indica
te that gene flow occurs between individuals in Nodularia populations.