The endosymbiotic theory for the origin of eukaryotic cells' proposes that
genetic information can be transferred from mitochondria to the nucleus of
a cell, and genes that are probably of mitochondrial origin have been found
in nuclear chromosomes(2). Occasionally, short or rearranged sequences hom
ologous to mitochondrial DNA are seen in the chromosomes of different organ
isms including yeast, plants and humans(3). Here we report a mechanism by w
hich fragments of mitochondrial DNA, in single or tandem array, are transfe
rred to yeast chromosomes under natural conditions during the repair of dou
ble-strand breaks in haploid mitotic cells. These repair insertions origina
te from noncontiguous regions of the mitochondrial genome. Our analysis of
the Saccharomyces cerevisiae mitochondrial genome(4) indicates that the yea
st nuclear genome does indeed contain several short sequences of mitochondr
ial origin which are similar in size and composition to those that repair d
ouble-strand breaks. These sequences are located predominantly in non-codin
g regions of the chromosomes, frequently in the vicinity of retrotransposon
long terminal repeats, and appear as recent integration events. Thus, colo
nization of the yeast genome by mitochondrial DNA is an ongoing process.