The day-time cover preferences of three size groups (small = <100; medium =
100-199; large = 200-299 mm total length (TL)) of juvenile shortfinned eel
s (Anguilla australis) and longfinned eels (A. dieffenbachii) were tested d
uring summer in replicate channels provided with natural (macrophytes, wood
y debris, cobbles) and artificial (shade, plastic pipes) cover types. Tests
on the longitudinal distribution of all three size groups of shortfinned e
el (with no cover in the channels) revealed no significant bias in the dist
ribution of small and medium eels, but did so for large eels which favoured
the ends of the channels. Similar bias occurred in the actual cover prefer
ence tests, which was adjusted for by the Poisson log-linear model used in
analysing the data. When the species were tested separately, small and medi
um eels of both species preferred cobbles and macrophytes more or less equa
lly, whereas large eels showed a clear preference for macrophytes and a min
or attraction for cobbles. When tested together, species cover preferences
differed significantly, with a greater proportion of all sizes of longfins
in the cobbles and shortfins in the macrophytes and woody debris. Artificia
l cover was an unattractive alternative to natural cover for all sizes of b
oth species of eel. The results of these experiments suggest that both size
and species interactions influence the distribution of juveniles of both s
pecies in the wild.