Hepatocyte growth factor (HGF) is a heparin-binding. multipotent growth fac
tor that transduces a wide range of biological signals, including mitogenes
is, motogenesis, and morphogenesis. Heparin or closely related heparan sulf
ate has profound effects on: HGF signaling. A heparin-binding site in the N
-terminal (N) domain of HGF was proposed on the basis of the clustering of
surface positive charges [Zhou, H., Mazzulla, M. J., Kaufman, J. D., Stahl,
S. J., Wingfield, P. T., Rubin, J. S., Bottaro, D. P., and Byrd, R. A. (19
98) Structure 6, 109-116]. In the present study, we confirmed this binding
site in a heparin titration experiment monitored by nuclear magnetic resona
nce spectroscopy, and we estimated the apparent dissociation constant (Kd)
Of the heparin-protein complex by NMR and fluorescence techniques. The prim
ary heparin-binding site is composed of Lys60, Lys62, and Arg73, with addit
ional contributions from the adjacent Arg76, Lys78, and N-terminal basic re
sidues. The Kd Of binding is in the micromolar range. A heparin disaccharid
e analogue, sucrose octasulfate, binds with similar affinity to the N domai
n and to a naturally occurring HGF isoform, NK1, at nearly the same region
as in heparin binding. N-15 relaxation data indicate structural flexibility
on a microsecond-to-millisecond time scale around the primary binding site
in the N domain. This flexibility appears to be dramatically reduced by li
gand binding. On the basis of the NK1 crystal structure, we propose a model
in which heparin binds to the two primary binding-sites and the N-terminal
regions of the N domains and stabilizes an NK1 dimer.